PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000903.1_g00012.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 513aa    MW: 53298.1 Da    PI: 8.4922
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000903.1_g00012.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.5e-056688123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             ++C++C+k F r  nL+ H r H
  Itr_sc000903.1_g00012.1 66 FVCEICNKGFQRDQNLQLHRRGH 88
                             89*******************88 PP

2zf-C2H214.50.00011142164123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              +kC +C+k +  +s+Lk H + +
  Itr_sc000903.1_g00012.1 142 WKCDKCSKKYAVQSDLKAHSKIC 164
                              58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-56588IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.09E-76588No hitNo description
PROSITE profilePS5015710.9496688IPR007087Zinc finger, C2H2
SMARTSM003550.0176688IPR015880Zinc finger, C2H2-like
PfamPF121718.2E-56688IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SMARTSM00355190107137IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.9E-5130163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.09E-7137162No hitNo description
PROSITE profilePS501578.746142170IPR007087Zinc finger, C2H2
SMARTSM0035566142162IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MPVDGDNSSA VNDSTGSGEA SVSSSGNQAA PPKATSKKRR NLPGMPDPDA EVIALSPKTL  60
LATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRSSN EVKKKVYVCP EPTCVHHDPS  120
RALGDLTGIK KHFCRKHGEK KWKCDKCSKK YAVQSDLKAH SKICGTKEYK CDCGTLFSRK  180
DSFITHRAFC DALAVESAKA QTDMAAPSAD EEPVPPSSSP PPQPPPQPTI APPPPPPVTP  240
QSTPAVPSVL AVQKQPVLPE NPGTNLPGST PKQVVEETTV ITSLTGSCSC SSSSSSNGSS  300
SSSVFASLFA SATASGTARS QASGFADMFQ SMAPEKTLEI APQPSSKETI SLCLAMNHGS  360
SIFGPPGQDR RQFAPSPQPA MSATALLQKA AQMGAAATNS SFLRGLGIVS SSSPSSGQQE  420
WSGRQIETDA GLGLSLPCDG GSGLKELMLG TPSVFGPKHP TLDLLGLGMA AGGGPSPGLS  480
ALMTSMGGNI DVAAAAGSFG TTDFSGKDIG RNS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004232386.10.0PREDICTED: zinc finger protein NUTCRACKER isoform X1
SwissprotQ9LVQ71e-175IDD1_ARATH; Protein indeterminate-domain 1
TrEMBLM1AYI40.0M1AYI4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000330390.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-108indeterminate(ID)-domain 2